Introduction
Software
Experiment
Data processing
Post-processing and results evaluation
Advanced discussions
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Go to the newly created folder (which is still empty). Then type to the Konsole:
peaksearch.py -n ../'directory'/'directory stem' -f 0 -l 111 -d ../'directory'/'median file20000.edf' -t &&&
-f marks the number of the first image, -l the number of the last image.
&&& is a space holder for the intensity threshold. You can also add more than one threshold by exceeding the code by another -t &&& -t &&& -t &&& …, depending on how many thresholds you want to test.
From now on, we call the newly created files processed data. Proceed with ImageD11 to look at the processed data.
Sometimes the algorithm does not work because it cannot read the median file. You can try to run PeakSearch without typing -d median_file.edf. Sometimes this works.
