Introduction
Software
Experiment
Data processing
Post-processing and results evaluation
Advanced discussions
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Go to the newly created folder (which is still empty). Then type to the Konsole:
peaksearch.py -n ../'directory'/'directory stem' -f 0 -l 111 -d ../'directory'/'median file.edf' -t &&&
-f marks the number of the first image, -l the number of the last image.
&&& is a space holder for the intensity threshold. You can also add more than one threshold by exceeding the code by another -t &&& -t &&& -t &&& …, depending on how many thresholds you want to test.
From now on, we call the newly created files processed data. Proceed with ImageD11 to look at the processed data.
