Differences

This shows you the differences between two versions of the page.

--- software:gettingstartedmax [2023/12/05 16:10] – smerkel
+++ software:gettingstartedmax [2026/08/10 09:05] (current) – smerkel
@@ Line 1: / Line 1: @@
-====== Getting started on a mac ======
+====== Getting started with Anaconda ======
 A minimal set of data processing tools could include
- * [[software:fabian|Fabian]] : to look at diffraction images and median calculations
+  * [[timeless_viewer|TIMEleSS Viewer]] : to look at diffraction images and median calculations
- * [[software:imaged11|ImageD11]]: script for peak search, experimental parameters refinement, peak assignment, can do grain indexing, and many others
+  * [[software:imaged11|ImageD11]]: script for peak search, experimental parameters refinement, peak assignment, can do grain indexing, and many others
- * [[software:grainspotter|GrainSpotter]]: grain indexing
+  * [[software:grainspotter|GrainSpotter]]: grain indexing
- * [[software:TIMEleSSTools|Specific TIMEleSS tools]]: a collection of scripts from the TIMEleSS projects, for both pre- and post-processing
+  * [[software:TIMEleSSTools|Specific TIMEleSS tools]]: a collection of scripts from the TIMEleSS projects, for both pre- and post-processing
 Those are themselves built against a suite of libraries and could be hard to get working.
 ===== Step 1: Anaconda =====
-From the [[https://www.anaconda.com|Anaconda]] website,
+Anaconda is a wrapper the install programming environments that runs on Windows, macOS, and Linux. Conda should be able to quickly install, run, and update packages and their dependencies. It also easily creates, saves, loads, and switches between environments on your local computer.
-<WRAP center round help 60%>
-Conda is an open-source package and environment management system that runs on Windows, macOS, and Linux. Conda quickly installs, runs, and updates packages and their dependencies. It also easily creates, saves, loads, and switches between environments on your local computer. It was created for Python programs, but it can package and distribute software for any language.
+In recent years, however, Anaconda has become very bloated. You need to pay for services, and it is challenging to use. The main author of this wiki hence does not recommend Anaconda anymore and recommends installing a [[processing:minimal_software_intallation|dedicated python environement]].
-</WRAP>
+If you have Anaconda working and would like to use it. The instructions are below.
+==== Anaconda on a mac ====
-In fact, Anaconda is the easiest route to get multigrain data processing working on a mac. You first step is hence to [[https://docs.anaconda.com/free/anaconda/install/mac-os/ | install Anaconda on your mac]].
+You first step is hence to [[https://docs.anaconda.com/free/anaconda/install/mac-os/ | install Anaconda on your mac]].
 Once Anaconda is installed,
@@ Line 23: / Line 27: @@
   * At the Python REPL (the Python ''>>>'' prompt), exit out of the Python REPL using the command ''exit()''.
-===== Step 2: Fable-3XRD packages with pip or automated install =====
+===== Step 2: Getting started =====
+The following packages should be installed from anaconda to avoid compatibility issues
+  * numpy: ''conda install -c anaconda numpy''
+  * scipy: ''conda install -c anaconda scipy''
+  * matplotlib: ''conda install -c anaconda matplotlib''
+  * pyqt: ''conda install -c anaconda pyqt''
+  * Pmw: ''conda install -c conda-forge pmw''
+  * OpenPG: ''conda install  pyopenGL''
+Then there are two packages wich ended up conflicting when trying to install using conda. Resorting to pip instead:
+  * fabio: ''python -m pip install fabio''
+  * pyopengltk: ''python -m pip install pyopengltk''
+You also need to install ''silx'', either with the ''conda'' command or ''pip'', whatever works.
+===== Step 3: Fable-3XRD packages with pip or automated install =====
 Python packages can be installed from source, downloading the source code from the original website, or through [[https://pip.pypa.io/en/stable/ | pip]]. Source download will always get you the latest version, with the latest developments. Installation with pip is much easier, but may not be the most up-to-date.
@@ Line 34: / Line 54: @@
   * silx: ''python -m pip install silx'' (not a Fable-3XRD but could become useful in the future)
-[[software:grainspotter|GrainSpotter]], also, is available automatically on Anaconda (GrainSpotter is a C program, hence the difference procedure)
+[[software:grainspotter|GrainSpotter]], also, is available automatically on Anaconda if you are using linux (GrainSpotter is a C program, hence the difference procedure)
   * In a terminal: ''conda install -c fable grainspotter''
+  * This does not seem to work with a mac, see below (installing from source)
 Those few lines will install the packages, but also thousands of various libraries that they depend on.
@@ Line 43: / Line 64: @@
 Other packages are required but need to be installed from the [[https://github.com/FABLE-3DXRD | Fable-3DXRD source at github]]:
   * [[software:polyxsim|polyxsim]] (used by some of the TIMEleSS-tools)
-  * [[software:fabian|fabian]]
+  * [[timeless_viewer|TIMEleSS Viewer]]
 For both, procedure is identical
@@ Line 54: / Line 75: @@
   * type ''python setup.py install''
-By now, you should be done and have a minimal working installation on your mac.
+[[software:grainspotter|GrainSpotter]] is a C program which, on a mac, is not readily available in anaconda
+  * Download the GrainSpotter source code from [[https://sourceforge.net/p/fable/code/HEAD/tree/GrainSpotter/trunk/]],
+  * Move into the folder with GrainSpotter and type ''make'',
+  * Copy ''GrainSpotter.0.90'' somewhere where you can access it easily. This is the executable.
+It should work out of the box.
+By now, you should be done and have a minimal working installation on your system.