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sidebar [2019/06/07 17:22] – matthiassidebar [2026/08/10 08:53] (current) – smerkel
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   * [[dac_experiments:info|Literature]]   * [[dac_experiments:info|Literature]]
  
-**[[software:start|Software]]** +**Software** 
-  * [[software:fabian|Fabian]] +  * General 
-  * [[software:imagemath|Imagemath]] +    * [[software:start|Introduction]] 
-  * [[software:peaksearch|Peaksearch]] +    * [[software:gettingstartedmax|Getting started with Anaconda]] 
-  * [[software:imaged11|ImageD11]] +    * [[processing:minimal_software_intallation|Getting started with a python environement (recommended)]] 
-  * [[software:grainspotter|GrainSpotter]] +  * Individual packages 
-  * [[software:polyxsim|PolyXSim]] +    * [[software:timeless_viewer|TIMEleSS Viewer]] 
-  * [[software:fitallb|FitAllB]] +    * [[software:peaksearch|Peaksearch]] 
-  * [[software:xfab|xfab]] +    * [[software:imaged11|ImageD11]] 
-  * [[software:timelesstools|TIMEleSS tools]]+    * [[software:grainspotter|GrainSpotter]] 
 +    * [[software:polyxsim|PolyXSim]] 
 +    * [[software:fitallb|FitAllB]] 
 +    * [[software:xfab|xfab]] 
 +    * [[software:timelesstools|TIMEleSS tools]] 
 +    * [[software:mtex|MTeX]] 
 +    * [[software:vesta|VESTA]]
  
 **Experiment** **Experiment**
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   * [[dac_experiments:sample_preparation|Sample preparation]]   * [[dac_experiments:sample_preparation|Sample preparation]]
  
-**X-Ray Data**+**[[processing:preprocessing|Pre-processing X-Ray Data]]**
   * [[xray_data:convertfileseries|Convert file series to EDF]]   * [[xray_data:convertfileseries|Convert file series to EDF]]
  
 **Data processing** **Data processing**
-  * Data processing workflow +  * **[[processing:start|Overview]]** 
-    * [[processing:start|General workflow]] +  * **[[processing:workflow_training|Training with a simulation]]**
-    * [[processing:workflow_training|Training with a simulation]] +
-    * [[processing:workflow_dac_data|Processing real DAC data]] +
-  * Steps when training with synthetic data+
     * [[processing:synthetic_dataset|Creation of the synthetic dataset]]     * [[processing:synthetic_dataset|Creation of the synthetic dataset]]
-    * [[processing:background|Evaluate and subtract background]]+    * [[processing:backgroundgeneral|Background evaluation]]
     * [[processing:search_for_peaks|Search for peaks]]     * [[processing:search_for_peaks|Search for peaks]]
     * [[processing:compute_gvectors|Compute G-vectors]]     * [[processing:compute_gvectors|Compute G-vectors]]
     * [[processing:indexing_with_grainspotter|Grain indexing (with GrainSpotter)]]     * [[processing:indexing_with_grainspotter|Grain indexing (with GrainSpotter)]]
-    * [[processing:compare-grain-orientations|Compare grain orientations]] 
     * [[processing:indexing_with_imaged11|Grain indexing (with ImageD11)]]     * [[processing:indexing_with_imaged11|Grain indexing (with ImageD11)]]
-  * Steps when working with true data +    * [[processing:compare-grain-orientations|Compare grain orientations]] 
-    * [[processing:background|Evaluate and subtract background]]+    * [[evaluation:plotting-grain-orientations|Plotting grain orientations]] 
 +  * **[[processing:workflow_dac_data|Processing real DAC data]]** 
 +    * [[processing:remove_bad_images|Remove bad images]] 
 +    * [[processing:backgrounddac|Background in real life]]
     * [[processing:clean-diamond-anvil-cell-data|Clean up diamond cell data]]     * [[processing:clean-diamond-anvil-cell-data|Clean up diamond cell data]]
     * [[processing:search_for_peaks|Search for peaks]]     * [[processing:search_for_peaks|Search for peaks]]
 +    * [[processing:phase_identification|Identify your phases]]
     * [[processing:compute_gvectors|Compute G-vectors]]     * [[processing:compute_gvectors|Compute G-vectors]]
     * [[processing:indexing_with_grainspotter|Grain indexing (with GrainSpotter)]]     * [[processing:indexing_with_grainspotter|Grain indexing (with GrainSpotter)]]
     * [[processing:indexing_with_imaged11|Grain indexing (with ImageD11)]]     * [[processing:indexing_with_imaged11|Grain indexing (with ImageD11)]]
-    * [[processing:complex-multi-phase|In the works: indexing a complex dataset with many phases]]+  * **Advanced topics** 
 +    * [[processing:advanced_better_crystallography| Better crystallography]] 
 +    * [[processing:advanced_indexing_with_grainspotter| Grainspotter indexing loops]] 
 +    * [[processing:complex-multi-phase| Multiple phases samples]] 
 +    * [[processing:grain_sizes| Grain size distributions]] 
 +    * [[processing:advanced_tricks| Advanced tricks]] 
 + 
 +**Post-processing and results evaluation** 
 +    * [[evaluation:plotting-grain-orientations|Plotting grain orientations]] 
 +    * [[evaluation:evaluategrainindexing|Graphical assessment of indexing quality for one grain]] 
 +    * [[evaluation:evaluate_indexing_statistics|Evaluate your indexing performance]]
  
 **[[fileformat:start|File formats]]** **[[fileformat:start|File formats]]**
   * [[fileformat:cif|cif]] (Crystallographic Information Format)   * [[fileformat:cif|cif]] (Crystallographic Information Format)
   * [[fileformat:inp:basic|inp]] (Input file for PolyXSim simulation)   * [[fileformat:inp:basic|inp]] (Input file for PolyXSim simulation)
 +  * [[fileformat:prm|prm]] (parameter file for ImageD11)
 +  * [[fileformat:gve|gve]] (G-Vectors)
   * [[fileformat:ini|ini]] (Input file for GrainSpotter)   * [[fileformat:ini|ini]] (Input file for GrainSpotter)
   * [[fileformat:edf|edf]] (Format of diffraction images)   * [[fileformat:edf|edf]] (Format of diffraction images)
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 **Advanced discussions** **Advanced discussions**
   * [[advanced:2pi_or_not|2π or not?]]   * [[advanced:2pi_or_not|2π or not?]]
 +  * [[advanced:3D_rotations|3D rotations]]
 +  * [[dac_experiments:geometry|Experiment geometry and O-Matrix]]
 +  * {{ :processing:fable_geometry_version_1.0.8.pdf |}}
 +  * {{ :processing:fableimageorientdoc_0.5.pdf |}}
  
 <wrap lo>[[sidebar|edit the sidebar]]</wrap> <wrap lo>[[sidebar|edit the sidebar]]</wrap>
sidebar.1559920961.txt.gz · Last modified: by matthias