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processing:extractgvegrain
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processing:extractgvegrain [2019/07/22 15:34] smerkel created |
processing:extractgvegrain [2019/07/22 15:37] (current) smerkel |
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| You can use it once you have run an indexing. The input files are | You can use it once you have run an indexing. The input files are | ||
| - | * the output file from the indexing (GrainSpotter), | + | * the output file from the indexing ([[processing:indexing_with_grainspotter|with GrainSpotter]] at present, the code could be improved to also deal with [[processing:indexing_with_imaged11|ImageD11 indexings]]), |
| - | * the flt file with the list of peaks that was used for indexing. | + | * the flt file with the [[processing:search_for_peaks|list of peaks]] that was used for indexing. |
| If you run the code without the ''saveall option'', it will save all peaks that were assigned to a grain (any grain) into the output file you defined. | If you run the code without the ''saveall option'', it will save all peaks that were assigned to a grain (any grain) into the output file you defined. | ||
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| If you run the code with the ''saveall option'', it will save all peaks that were assigned to a grain (any grain) into the output file you defined, as well as a separate file for each grain in the indexing file and name them as ''newFLT-GrainXXX.flt'', where ''newFLT'' is what you defined for output. | If you run the code with the ''saveall option'', it will save all peaks that were assigned to a grain (any grain) into the output file you defined, as well as a separate file for each grain in the indexing file and name them as ''newFLT-GrainXXX.flt'', where ''newFLT'' is what you defined for output. | ||
| - | You can then overlay the diffraction data with the peaks that were assign (either to all or to a single grain) using Fabian. | + | You can then overlay the diffraction data with the peaks that were assign (either to all or to a single grain) using [[software:fabian|Fabian]]. |
| ==== timelessSaveFLTGrains ==== | ==== timelessSaveFLTGrains ==== | ||
processing/extractgvegrain.1563809689.txt.gz · Last modified: 2019/07/22 15:34 by smerkel
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