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software:gettingstartedmax
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| A minimal set of data processing tools could include | A minimal set of data processing tools could include | ||
| - | * [[software:fabian|Fabian]] : to look at diffraction images and median calculations | + | * [[software:fabian|Fabian]] : to look at diffraction images and median calculations |
| - | * [[software:imaged11|ImageD11]]: script for peak search, experimental parameters refinement, peak assignment, can do grain indexing, and many others | + | * [[software:imaged11|ImageD11]]: script for peak search, experimental parameters refinement, peak assignment, can do grain indexing, and many others |
| - | * [[software:grainspotter|GrainSpotter]]: grain indexing | + | * [[software:grainspotter|GrainSpotter]]: grain indexing |
| - | * [[software:TIMEleSSTools|Specific TIMEleSS tools]]: a collection of scripts from the TIMEleSS projects, for both pre- and post-processing | + | * [[software:TIMEleSSTools|Specific TIMEleSS tools]]: a collection of scripts from the TIMEleSS projects, for both pre- and post-processing |
| Those are themselves built against a suite of libraries and could be hard to get working. | Those are themselves built against a suite of libraries and could be hard to get working. | ||
| Line 22: | Line 22: | ||
| * You should see something like ''Python 3.6.3 | Anaconda Inc. |'' | * You should see something like ''Python 3.6.3 | Anaconda Inc. |'' | ||
| * At the Python REPL (the Python ''>>>'' prompt), exit out of the Python REPL using the command ''exit()''. | * At the Python REPL (the Python ''>>>'' prompt), exit out of the Python REPL using the command ''exit()''. | ||
| + | |||
| + | The following packages should be installed from anaconda to avoid compatibility issues | ||
| + | * numpy: ''conda install -c anaconda numpy'' | ||
| + | * scipy: ''conda install -c anaconda scipy'' | ||
| + | * matplotlib: ''conda install -c anaconda matplotlib'' | ||
| + | * pyqt: ''conda install -c anaconda pyqt'' | ||
| + | * Pmw: ''conda install -c conda-forge pmw'' | ||
| + | * OpenPG: ''conda install pyopenGL'' | ||
| + | |||
| + | Then there are two packages with ended up conflicting when trying to install using conda. Resorting to pip instead: | ||
| + | * fabio: ''python -m pip install fabio'' | ||
| + | * pyopengltk: ''python -m pip install pyopengltk'' | ||
| ===== Step 2: Fable-3XRD packages with pip or automated install ===== | ===== Step 2: Fable-3XRD packages with pip or automated install ===== | ||
| Line 34: | Line 46: | ||
| * silx: ''python -m pip install silx'' (not a Fable-3XRD but could become useful in the future) | * silx: ''python -m pip install silx'' (not a Fable-3XRD but could become useful in the future) | ||
| - | [[software:grainspotter|GrainSpotter]], also, is available automatically on Anaconda (GrainSpotter is a C program, hence the difference procedure) | + | [[software:grainspotter|GrainSpotter]], also, is available automatically on Anaconda if you are using linux (GrainSpotter is a C program, hence the difference procedure) |
| * In a terminal: ''conda install -c fable grainspotter'' | * In a terminal: ''conda install -c fable grainspotter'' | ||
| + | * This does not seem to work with a mac, see below (installing from source) | ||
| Those few lines will install the packages, but also thousands of various libraries that they depend on. | Those few lines will install the packages, but also thousands of various libraries that they depend on. | ||
| Line 53: | Line 66: | ||
| * type ''python setup.py build'', | * type ''python setup.py build'', | ||
| * type ''python setup.py install'' | * type ''python setup.py install'' | ||
| + | |||
| + | [[software:grainspotter|GrainSpotter]] is a C program which, on a mac, is not readily available in anaconda | ||
| + | * Download the GrainSpotter source code from [[https://sourceforge.net/p/fable/code/HEAD/tree/GrainSpotter/trunk/]], | ||
| + | * Move into the folder with GrainSpotter and type ''make'', | ||
| + | * Copy ''GrainSpotter.0.90'' somewhere where you can access it easily. This is the executable. | ||
| + | |||
| + | It should work out of the box. | ||
| By now, you should be done and have a minimal working installation on your mac. | By now, you should be done and have a minimal working installation on your mac. | ||
software/gettingstartedmax.1701789029.txt.gz · Last modified: 2023/12/05 15:10 by smerkel
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