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processing:search_for_peaks
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processing:search_for_peaks [2019/02/20 21:29] smerkel |
processing:search_for_peaks [2019/02/20 21:51] (current) smerkel |
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| If you already removed the background (in the diamond spot removal step, for instance), you should not remove any background anymore. This would remove the background twice! | If you already removed the background (in the diamond spot removal step, for instance), you should not remove any background anymore. This would remove the background twice! | ||
| + | |||
| + | Full example | ||
| + | peaksearch.py -n ../Data/data -f 0 -l 111 -d ../Data/median.edf -t 20 | ||
| + | in which | ||
| + | * ../Data/: path to the folder with the .edf files, | ||
| + | * data: the stem (common part) of the .edf files; | ||
| + | * 0: number of the first .edf file, | ||
| + | * 111: number of the last .edf file, | ||
| + | * ../Data/median.edf: name and path of the median image, | ||
| + | * 20: a threshold over which to identify peaks (you can request multiple thresholds with multiple -t options). | ||
| There are other parameters you can apply. To get a full list: | There are other parameters you can apply. To get a full list: | ||
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| Below is an example of Fabian showing a diffraction image in Fabian after background processing and artifact removing as well as the same image with peaks overlay after a peak search. | Below is an example of Fabian showing a diffraction image in Fabian after background processing and artifact removing as well as the same image with peaks overlay after a peak search. | ||
| - | [{{:processing:diff-1345-diamond-removed.jpg?300 |Diffraction image in Fabian after background processing and artifact removing)}}][{{:processing:diff-1345-peaks.jpg?300|Same image showing peaks after peak search }}] | + | [{{:processing:diff-1345-diamond-removed.jpg?300 |Diffraction image in Fabian after background processing and artifact removing)}}][{{ :processing:diff-1345-peaks.jpg?300|Same image showing peaks after peak search }}] |
processing/search_for_peaks.1550698199.txt.gz ยท Last modified: 2019/02/20 21:29 by smerkel
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