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peaksearching
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| Both sides previous revision Previous revision Next revision | Previous revision | ||
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peaksearching [2018/06/28 10:01] estelle |
peaksearching [2019/02/24 10:01] (current) estelle |
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| - | For that, use: | + | For that, use for example: |
| <WRAP center box 90%> | <WRAP center box 90%> | ||
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| * 111: the number of the last .edf file; | * 111: the number of the last .edf file; | ||
| * simu_50grainsm20000.edf: the median image | * simu_50grainsm20000.edf: the median image | ||
| - | * 20: the value of the treshold you want to fix to filter the peaks. | + | * 20: the value of the treshold you want to fix to filter the peaks (you can ask several filter when you add -t options). |
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| + | The command create two files (.flt and .spt) for each filter in the current folder. | ||
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| + | **Be careful** : do not remove the median image (-d ...) if you already did it once (for example in the diamond spots removal for cleaning a real dataset)!! Otherwise, Peaksearch will not find the smaller peaks anymore. | ||
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| + | {{ :seb-1345-peaks.jpg?nolink&400 |}} | ||
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| + | In this image, the Peaksearch (in red) should have found much more peaks than it did, cause some seems really intense. I surely did remove two times the median, once during diamond removal and a second during peakshearching. | ||
peaksearching.1530180104.txt.gz · Last modified: 2019/02/18 10:11 (external edit)
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